1. Chaudhary, R. C. 1996. Standard Evaluation System for Rice. International Rice Research Institute, Manila. Philippines.##Hosseini Chaleshtari, M., S. Houshmand, S. Mohammadi, A. Tarang, M. Khoddambashi and H. R. Soroush. 2012. Mapping quantitative trait loci for plant height, heading time, growth duration and grain yield in two advanced back cross populations of rice. Iran. J. Crop Sci. 14(3): 235-249. (In Persian with English abstract).##Hosseini Chaleshtari, M., H. Rahimsourosh and S. Houshmand. 2014. Estimation of epistasis and interaction with environment to control of rice yield over four years. First International and 13th National Iranian Crop Science Congress, 26-28 Aug. 2014, Karaj, Iran. (In Persian with English abstract).##Hosseini, M., S. Houshmand, S. Mohamadi, A. Tarang, M. Khodambashi and H. Rahimsoroush. 2012. Detection of QTLs with main, epistatic and QTL × environment interaction effects for rice grain appearance quality traits using two populations of backcross inbred lines (BILs). Field Crops Res. 135: 97-106.##Manly, K. F., R. H. Cudmore Jr and J. M. Meer. 2001. Map Manager QTX, cross-platform software for genetic mapping. Mammalian Genome. 12: 930-932.##McCouch, S. R., L. Teytelman, Y. Xu, K. B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li and Y. Xing. 2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.##Murray, M. G. and W. F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4326.##Rabiei, B., M. Masaeli and A. Tarang. 2013. Identification of QTLs for grain yield and yield component in rice (Oryza sativa L.). Iran. J. Field Crop Sci. 44: 293-304. (In Persian with English abstract).##Rabiei, B., M. Valizadeh, B. Ghareyazie, M. Moghaddam and A. Ali. 2004. Identification of QTLs for rice grain size and shape of Iranian cultivars using SSR markers. Euphytica. 137: 325-332.##Rahimi, M., B. Rabiei, H. Dehghani and A. Tarang. 2014. Mapping main and epistatic QTLs for drought tolerance indices in F5 population of rice. New Genetic J. 4: 435-448.##Sabouri, A., M. Toorchi, B. Rabiei, S. Aharizad, A. Moumeni and R. Singh. 2010. Identification and mapping of QTLs for agronomic traits in indica-indica cross of rice (Oryza sativa L.). Cereal Res. Commun. 38: 317-326.##Satagopan, J. M., B. S. Yandell, M. A. Newton and T. C. Osborn. 1996. A Bayesian approach to detect quantitative trait loci using Markov Chain Monte Carlo. Genetics. 144: 805-816.##Singh, A., J. Carandang, Z. J. C. Gonzaga, B. C. Collard, A. M. Ismail and E. M. Septiningsih. 2017. Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions. Rice. 10: 15.##Temnykh, S., W. D. Park, N. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y. G. Cho, T. Ishii and S. R. McCouch. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100: 697-712.##Thomson, M., T. Tai, A. McClung, X. Lai, M. Hinga, K. Lobos, Y. Xu, C. Martinez and S. R. McCouch. 2003. Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor. Appl. Genet. 107: 479-493.##Wang, C., J. Rutledge and D. Gianola. 1994. Bayesian analysis of mixed linear models via Gibbs sampling with an application to litter size in Iberian pigs. Genet. Select. Evol. 26: 91.##Wang, D., J. Zhu, Z. Li and A. Paterson. 1999. Mapping QTLs with epistatic effects and QTL× environment interactions by mixed linear model approaches. Theor. Appl. Genet. 99: 1255-1264.##Wang, P., Y. Xing, Z. Li and S. Yu. 2012a. Improving rice yield and quality by QTL pyramiding. Mol. Breed. 29: 903-913.##Wang, P., G. Zhou, K. Cui, Z. Li and S. Yu. 2012b. Clustered QTL for source leaf size and yield traits in rice (Oryza sativa L.). Mol. Breed. 29: 99-113.##Wang, X., Y. Pang, J. Zhang, Q. Zhang, Y. Tao, B. Feng, T. Zheng, J. Xu and Z. Li. 2014. Genetic background effects on QTL and QTL× environment interaction for yield and its component traits as revealed by reciprocal introgression lines in rice. The Crop J. 2: 345-357.##Wu, B., Z. Han and Y. Xing, 2013. Genome Mapping, Markers and QTLs. In: Q. Zhang and R.A. Wing (Eds.), Genetics and Genomics of Rice. Crops and Models, vol 5. Springer, New York, NY.##Xing, Y., Y. Tan, J. Hua, X. Sun, C. Xu and Q. Zhang. 2002. Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor. Appl. Genet. 105: 248-257.##Yang, J., C. Hu, H. Hu, R. Yu, Z. Xia, X. Ye and J. Zhu. 2008. QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics. 24: 721-723.##Yang, J. and J. Zhu. 2005. Methods for predicting superior genotypes under multiple environments based on QTL effects. Theor. Appl. Genet. 110: 1268-1274.##Ye, Z., J. Wang, Q. Liu, M. Zhang, K. Zou and X. Fu. 2009. Genetic relationships among panicle characteristics of rice (Oryza sativa L.) using unconditional and conditional QTL analyses. J. Plant Biol. 52: 259-267.##You, A., X. Lu, H. Jin, X. Ren, K. Liu, G. Yang, H. Yang, L. Zhu and G. He. 2006. Identification of quantitative trait loci across recombinant inbred lines and testcross populations for traits of agronomic importance in rice. Genetics. 172: 1287-1300.##Yue, F., Z. Rong-rong, L. Ze-chuan, C. Li-yong, W. Xing-hua and C. Shi-hua. 2015. Quantitative trait locus analysis for rice yield traits under two nitrogen levels. Rice Sci. 22: 108-115.##Zhang, J., X. Ou, H. Hu, B. Du, W. Lv, L. Yang, D. Xing, J. Xu, X. Qiu and T. Zheng. 2018. Identification of QTLs for yield-related traits using two sets of introgression lines with a common donor parent in rice. Int. J. Agric. Biol. 20: 15-24.##Zhao, F., H. Zhu, R. Zeng, G. Zhang and S. Xu. 2016. Detection of additive and additive× environment interaction effects of QTLs for yield‐component traits of rice using single‐segment substitution lines (SSSLs). Plant Breed. 135: 452-458.##Zhao, J., K. Jiang, L. Yang, Q. Yang, X. Wan, Y. Cao, S. You, J. LUO, T. ZHANG and J. Zheng. 2013. QTL mapping for yield related components in a RIL population of rice. Chinese J. Rice Sci. 27: 344-352.##Zhu, M., D. Liu, W. Liu, D. Li, Y. Liao, J. Li, C. Fu, F. Fu, H. Huang and X. Zeng. 2017. QTL mapping using an ultra-high-density SNP map reveals a major locus for grain yield in an elite rice restorer R998. Sci. Reports. 7: 10914.##Zhuang, J. Y., Y. Y. Fan, Z. M. Rao, J. L. Wu, Y. W. Xia and K. L. Zheng. 2002. Analysis on additive effects and additive-by-additive epistatic effects of QTLs for yield traits in a recombinant inbred line population of rice. Theor. Appl. Genet. 105: 1137-1145.##Zou, G., H. Mei, H. Liu, G. Liu, S. Hu, X. Yu, M. Li, J. Wu and L. Luo. 2005. Grain yield responses to moisture regimes in a rice population: association among traits and genetic markers. Theor. Appl. Genet. 112: 106-113.##